STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0968080tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family. (375 aa)    
Predicted Functional Partners:
RCOM_0380820
DNA binding protein, putative.
   
  
 0.631
RCOM_1721250
Pantoate-beta-alanine ligase, putative.
  
    0.548
RCOM_1063210
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.527
RCOM_0985520
Probable ribosome biogenesis protein RCOM_0985520; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.501
RCOM_0925050
Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative.
      
 0.499
RCOM_1361330
Mitochondrial oxoglutarate/malate carrier protein, putative; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.497
RCOM_1515620
tRNA (Guanine-n(7)-)-methyltransferase, putative.
  
 
 0.488
RCOM_0751510
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
  
 
 0.488
RCOM_0154700
RNA m5u methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 0.482
RCOM_1582810
Prolyl-tRNA synthetase, putative.
  
 
 0.452
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.