STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1064710Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (264 aa)    
Predicted Functional Partners:
RCOM_0383010
Brix domain containing protein, putative.
   
   0.924
RCOM_0682660
Protein penguin, putative.
   
 
 0.920
RCOM_0436100
Poly-A binding protein, putative.
   
   0.920
RCOM_1448870
RNA-binding protein, putative.
   
   0.917
RCOM_0952700
Bystin, putative.
   
 
 0.915
RCOM_1575910
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.913
RCOM_1362610
Ribosome biogenesis protein brix, putative.
   
   0.911
RCOM_1686350
RNA-binding protein nob1, putative.
   
  
 0.910
RCOM_1598290
Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.
   
 
 0.901
RCOM_0657470
rRNA-processing protein UTP23, putative.
   
 
 0.901
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.