RCOM_0521900 protein (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCOM_0521900

FAS1 domain-containing protein. (408 aa)

Predicted Functional Partners:

RCOM_1496680

0.529

RCOM_1595270

0.512

RCOM_1447960

0.512

RCOM_1176610

0.510

RCOM_0867050

0.501

RCOM_1538420

0.500

RCOM_1016720

0.500

RCOM_1345230

0.495

RCOM_1548470

0.495

RCOM_1593970

0.494

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0521900	RCOM_0867050	B9S9S6	B9S1P5	FAS1 domain-containing protein.	Uncharacterized protein.	0.501
RCOM_0521900	RCOM_1016720	B9S9S6	B9STL4	FAS1 domain-containing protein.	Uncharacterized protein.	0.500
RCOM_0521900	RCOM_1176610	B9S9S6	B9RW84	FAS1 domain-containing protein.	Uncharacterized protein.	0.510
RCOM_0521900	RCOM_1345230	B9S9S6	B9RN82	FAS1 domain-containing protein.	Uncharacterized protein.	0.495
RCOM_0521900	RCOM_1447960	B9S9S6	B9RH79	FAS1 domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.512
RCOM_0521900	RCOM_1496680	B9S9S6	B9R9E5	FAS1 domain-containing protein.	PORR domain-containing protein.	0.529
RCOM_0521900	RCOM_1538420	B9S9S6	B9S0V7	FAS1 domain-containing protein.	LEA_2 domain-containing protein.	0.500
RCOM_0521900	RCOM_1548470	B9S9S6	B9RPP7	FAS1 domain-containing protein.	DUF26 domain-containing protein 2, putative.	0.495
RCOM_0521900	RCOM_1593970	B9S9S6	B9R7S5	FAS1 domain-containing protein.	Uncharacterized protein.	0.494
RCOM_0521900	RCOM_1595270	B9S9S6	B9R7Y4	FAS1 domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.512
RCOM_0867050	RCOM_0521900	B9S1P5	B9S9S6	Uncharacterized protein.	FAS1 domain-containing protein.	0.501
RCOM_0867050	RCOM_1345230	B9S1P5	B9RN82	Uncharacterized protein.	Uncharacterized protein.	0.497
RCOM_0867050	RCOM_1496680	B9S1P5	B9R9E5	Uncharacterized protein.	PORR domain-containing protein.	0.430
RCOM_0867050	RCOM_1538420	B9S1P5	B9S0V7	Uncharacterized protein.	LEA_2 domain-containing protein.	0.422
RCOM_0867050	RCOM_1593970	B9S1P5	B9R7S5	Uncharacterized protein.	Uncharacterized protein.	0.464
RCOM_1016720	RCOM_0521900	B9STL4	B9S9S6	Uncharacterized protein.	FAS1 domain-containing protein.	0.500
RCOM_1016720	RCOM_1176610	B9STL4	B9RW84	Uncharacterized protein.	Uncharacterized protein.	0.526
RCOM_1016720	RCOM_1345230	B9STL4	B9RN82	Uncharacterized protein.	Uncharacterized protein.	0.760
RCOM_1176610	RCOM_0521900	B9RW84	B9S9S6	Uncharacterized protein.	FAS1 domain-containing protein.	0.510
RCOM_1176610	RCOM_1016720	B9RW84	B9STL4	Uncharacterized protein.	Uncharacterized protein.	0.526