STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1177890Ubiquitin-protein ligase, putative. (226 aa)    
Predicted Functional Partners:
RCOM_1344350
Ubiquitin, putative.
    
 0.656
RCOM_0529210
Ubiquitin, putative.
    
 0.656
RCOM_0936640
Ubiquitin conjugating enzyme, putative.
    
 0.557
RCOM_0249880
Ubiquitin-conjugating enzyme E2 I, putative; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.510
RCOM_1943230
HD-GYP domain-containing protein.
    
 
 0.479
RCOM_0293400
Ubiquitin, putative.
    
  0.473
RCOM_1264680
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 
 0.472
RCOM_0978050
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.423
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.