STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1521270N6-DNA-methyltransferase, putative. (354 aa)    
Predicted Functional Partners:
RCOM_0489740
Protein trm112, putative.
    
 0.970
RCOM_1434900
Peptide chain release factor, putative.
  
 
 0.829
RCOM_1077620
Peptide chain release factor, putative.
  
 
 0.829
RCOM_1343870
Peptide chain release factor, putative.
  
 
 0.829
RCOM_1300060
Peptide chain release factor, putative.
  
 
 0.829
RCOM_0555380
Peptide chain release factor, putative.
  
 
 0.829
RCOM_0516990
Iron-binding protein iscA, putative.
  
 
 0.829
RCOM_0902640
Coproporphyrinogen III oxidase, putative.
   
 
 0.799
RCOM_0244170
Eukaryotic peptide chain release factor GTP-binding subunit, putative.
    
 0.667
RCOM_1768240
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.600
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.