STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0659080Retinoblastoma-binding protein, putative. (424 aa)    
Predicted Functional Partners:
RCOM_0182630
Fertilization-independent endosperm protein, putative.
   
 0.979
RCOM_1048220
Histone acetyltransferase type B catalytic subunit, putative.
   
 0.960
RCOM_0461620
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.954
RCOM_0263520
Uncharacterized protein.
   
 0.952
RCOM_1502370
Polycomb protein embryonic flower, putative.
    
 0.941
RCOM_0191350
Polycomb protein embryonic flower, putative.
    
 0.941
RCOM_1460830
Chromatin assembly factor I P60 subunit, putative.
   
 
 0.937
RCOM_0604230
Set domain protein, putative.
    
 0.899
RCOM_1431990
Always early, putative.
    
 0.898
RCOM_0680380
Always early, putative.
    
 0.898
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.