STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0658300Pentatricopeptide repeat-containing protein, putative. (533 aa)    
Predicted Functional Partners:
RCOM_1339680
Ribonucleoprotein, chloroplast, putative.
   
 
 0.542
RCOM_1147300
Structural constituent of ribosome, putative.
   
 
 0.539
RCOM_0532540
Pentatricopeptide repeat-containing protein, putative.
      
 0.523
RCOM_0222580
Pentatricopeptide repeat-containing protein, putative.
  
     0.486
RCOM_0975970
Pentatricopeptide repeat-containing protein, putative.
   
  
 0.441
RCOM_1515340
50S ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.441
RCOM_0095330
Pentatricopeptide repeat-containing protein, putative.
  
     0.440
RCOM_1515490
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.
   
  
 0.439
RCOM_0012920
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
  
 
  0.434
RCOM_0353120
Uncharacterized protein.
  
     0.405
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.