STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0530730DUF971 domain-containing protein. (90 aa)    
Predicted Functional Partners:
RCOM_1444500
Uncharacterized protein.
    
  0.772
RCOM_1355220
DNA binding protein, putative.
      
 0.485
RCOM_1439860
Peripheral-type benzodiazepine receptor, putative.
      
 0.485
RCOM_0681230
Sentrin/sumo-specific protease, putative.
      
 0.426
RCOM_0993240
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
  
    0.416
RCOM_1501020
N(4)-(Beta-n-acetylglucosaminyl)-l-asparaginase, putative.
      
 0.410
RCOM_1039610
DNA binding protein, putative.
      
 0.410
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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