STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0470990Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
RCOM_0172960
Uncharacterized protein.
   
   0.580
RCOM_0798390
Uncharacterized protein.
      
 0.520
RCOM_1597110
ATRAD3, putative.
      
 0.515
RCOM_1597420
Diphthine synthase, putative.
      
 0.515
RCOM_0923730
Ubiquitin-protein ligase BRE1A, putative.
      
 0.515
RCOM_1517990
Uncharacterized protein.
      
 0.515
RCOM_1278170
TPR_REGION domain-containing protein.
      
 0.515
RCOM_0024680
F-box domain-containing protein.
      
 0.515
RCOM_0926010
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
      
 0.514
RCOM_1673470
Uncharacterized protein.
      
 0.508
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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