STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0030050LOB domain-containing protein, putative. (214 aa)    
Predicted Functional Partners:
RCOM_1468830
COBRA-like protein; Belongs to the COBRA family.
  
     0.515
RCOM_0917650
COBRA-like protein; Belongs to the COBRA family.
  
     0.515
RCOM_0485460
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.515
RCOM_1581970
Pentatricopeptide repeat-containing protein, putative.
  
     0.514
RCOM_1765230
Uncharacterized protein.
  
     0.513
RCOM_0917640
COBRA-like protein; Belongs to the COBRA family.
  
     0.510
RCOM_0507700
Uncharacterized protein.
  
     0.510
RCOM_0598030
Myosin heavy chain, clone, putative.
  
     0.509
RCOM_0343550
Uncharacterized protein.
  
     0.506
RCOM_1629580
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
  
  
 0.506
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.