STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1574350Casbene synthase, chloroplastic; Catalyzes the cyclization of geranylgeranyl diphosphate to casbene, a diterpene phytoalexin with antibacterial and antifungal activity. (601 aa)    
Predicted Functional Partners:
RCOM_0557410
Ent-kaurene synthase A, chloroplast, putative; Belongs to the terpene synthase family.
   
 
0.925
RCOM_1574380
Casbene synthase, chloroplast, putative.
  
  
 
0.900
RCOM_0553150
Geranyl geranyl pyrophosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.814
RCOM_1182760
Solanesyl diphosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.814
RCOM_1373490
Geranyl geranyl pyrophosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.814
RCOM_0013160
Geranyl geranyl pyrophosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.814
RCOM_0082580
Geranyl geranyl pyrophosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.814
RCOM_1471870
Geranylgeranyl hydrogenase, putative.
     
  0.800
RCOM_1110740
Geranylgeranyl hydrogenase, putative.
     
  0.800
RCOM_1303610
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.
      
 0.655
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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