STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAK54670.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
OAK54671.1
3-dehydroquinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.891
OAK54669.1
ATP-grasp enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.887
OAK54668.1
D-alanine--D-alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
OAK54667.1
Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.838
OAK51169.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.782
OAK54672.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
tynA
Tyramine oxidase; Catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.759
OAK53611.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.717
A3K89_10915
MFS transporter; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.674
OAK57338.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.672
Your Current Organism:
Rhodococcus kyotonensis
NCBI taxonomy Id: 398843
Other names: CCTCC AB206088, IAM 15415, JCM 23211, R. kyotonensis, Rhodococcus kyotonensis Li et al. 2007, strain DS472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.