STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAK51699.1Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
OAK51696.1
Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
OAK51698.1
Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.961
OAK51697.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.886
OAK51701.1
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.852
OAK51793.1
CdaR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.820
OAK51700.1
5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
OAK51695.1
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
OAK51246.1
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.677
OAK55427.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.652
OAK53136.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.566
Your Current Organism:
Rhodococcus kyotonensis
NCBI taxonomy Id: 398843
Other names: CCTCC AB206088, IAM 15415, JCM 23211, R. kyotonensis, Rhodococcus kyotonensis Li et al. 2007, strain DS472
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