OsI_03423 protein (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OsI_03423

Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (392 aa)

Predicted Functional Partners:

OsI_05503

0.978

OsI_24162

0.970

OsI_21146

0.968

OsI_19015

0.968

OsI_19961

0.965

OsI_28120

0.965

OsI_03661

0.962

OsI_13396

0.960

OsI_26621

0.958

OsI_32029

0.958

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_03423	OsI_03661	A2WU73	B8A930	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.962
OsI_03423	OsI_05503	A2WU73	B8AGX4	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	MDD_C domain-containing protein.	0.978
OsI_03423	OsI_13396	A2WU73	B8AR23	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.960
OsI_03423	OsI_19015	A2WU73	B8AZL8	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.968
OsI_03423	OsI_19961	A2WU73	A2Y4N6	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Nudix hydrolase domain-containing protein.	0.965
OsI_03423	OsI_21146	A2WU73	B8AX64	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Protein kinase domain-containing protein.	0.968
OsI_03423	OsI_24162	A2WU73	A2YG71	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.970
OsI_03423	OsI_26621	A2WU73	A2YN12	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.958
OsI_03423	OsI_28120	A2WU73	B8BBG7	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.965
OsI_03423	OsI_32029	A2WU73	A2Z330	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein.	0.958
OsI_03661	OsI_03423	B8A930	A2WU73	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.962
OsI_03661	OsI_19015	B8A930	B8AZL8	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.778
OsI_03661	OsI_19961	B8A930	A2Y4N6	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Nudix hydrolase domain-containing protein.	0.662
OsI_03661	OsI_21146	B8A930	B8AX64	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Protein kinase domain-containing protein.	0.778
OsI_03661	OsI_24162	B8A930	A2YG71	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.778
OsI_03661	OsI_26621	B8A930	A2YN12	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.960
OsI_03661	OsI_28120	B8A930	B8BBG7	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.778
OsI_03661	OsI_32029	B8A930	A2Z330	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.999
OsI_05503	OsI_03423	B8AGX4	A2WU73	MDD_C domain-containing protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.978
OsI_05503	OsI_13396	B8AGX4	B8AR23	MDD_C domain-containing protein.	Uncharacterized protein.	0.959

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About