STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OsI_29430Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. (560 aa)    
Predicted Functional Partners:
OsI_04747
Uncharacterized protein.
  
  
  0.900
OsI_02915
Uncharacterized protein.
  
  
  0.897
OsI_33884
Pectate lyase.
  
 
 0.887
OsI_14719
Pectate lyase.
  
 
 0.884
OsI_10538
Uncharacterized protein.
  
  
  0.883
OsI_27120
Uncharacterized protein.
  
  
  0.882
OsI_28615
Pectate lyase.
  
 
 0.878
OsI_05716
Uncharacterized protein.
  
  
  0.873
OsI_02351
Pectate lyase.
  
 
 0.867
OsI_04348
Pectate lyase.
  
 
 0.863
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.