Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7KII6Os04g0133200 protein. (481 aa)    
Predicted Functional Partners:
Q0JCJ0_ORYSJ
Os04g0466700 protein.
    
 0.741
Q2QWN0_ORYSJ
cDNA clone:J013050F15, full insert sequence.
   
 0.719
A0A0P0V7Z8
Os01g0738100 protein.
   
 0.594
A0A0P0WJ34
Os05g0207900 protein.
   
 0.594
A0A0P0XSV6
Os10g0157000 protein.
   
 0.594
A0A0P0Y009
Os11g0213900 protein.
   
 0.594
A0A0P0Y015
Os11g0214001 protein.
   
 0.594
A0A0P0YC88
Os12g0606900 protein.
   
 0.594
Q67VX6_ORYSJ
cDNA clone:002-107-F11, full insert sequence.
   
 0.594
A0A0N7KNQ5
Os07g0574550 protein.
   
 0.591
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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