Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7KIM4Os04g0192775 protein. (146 aa)    
Predicted Functional Partners:
Q0DJY2_ORYSJ
Os05g0214400 protein.
    
 0.816
A0A0P0XPV0
Os09g0544500 protein.
    
 0.727
Q6K7A1_ORYSJ
cDNA clone:J013042H05, full insert sequence.
    
 0.727
Q6Z4I2_ORYSJ
cDNA clone:J033046D05, full insert sequence.
    
 0.722
Q851R6_ORYSJ
cDNA clone:J013020B01, full insert sequence.
    
 0.722
A0A0N7KLN2
Os06g0183800 protein.
    
 0.717
A0A0P0VBB9
Os01g0881000 protein.
    
 0.717
Q0D6A3_ORYSJ
Os07g0497100 protein.
    
 0.717
Q0D6A4_ORYSJ
Os07g0497000 protein.
    
 0.717
Q6K6A1_ORYSJ
Os02g0817000 protein.
    
 0.717
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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