STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7KJZ6Os04g0692700 protein. (785 aa)    
Predicted Functional Partners:
Q6ZGM1_ORYSJ
cDNA clone:J023131N03, full insert sequence.
    
 0.947
A0A0P0VUH8
Os03g0205400 protein.
   
 0.946
A0A0N7KE35
Os01g0857900 protein.
    
 0.934
A0A0P0VI72
Os02g0307200 protein.
    
 0.934
Q6YX88_ORYSJ
cDNA clone:006-305-H09, full insert sequence.
   
 0.932
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
 0.925
B9EXR7_ORYSJ
Os01g0585400 protein.
    
 0.917
DBB1
DNA damage-binding protein 1; Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair (Probable). May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex (By similarity).
    
 0.917
A0A0P0X0W6
Os06g0697400 protein.
    
  0.907
Q84SP5_ORYSJ
RNA polymerase Rpb8 family protein, expressed; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.907
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.