Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7KMB2Os06g0573500 protein. (60 aa)    
Predicted Functional Partners:
A0A0P0VJH6
Os02g0514150 protein.
      
 0.500
A0A0P0XXE7
Os10g0549000 protein.
      
 0.500
Q69M33_ORYSJ
cDNA clone:J013077H13, full insert sequence.
      
 0.498
Q53NL2_ORYSJ
Xylanase inhibitor protein 2, putative, expressed.
      
 0.482
A0A0P0XZH2
Os11g0134950 protein.
      
 0.467
Q33AH5_ORYSJ
Calcium binding EGF domain containing protein, expressed.
      
 0.425
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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