Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0N7KPS2Os08g0378200 protein. (121 aa)    
Predicted Functional Partners:
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
  0.722
C7J1U6_ORYSJ
Os04g0589400 protein.
    
 0.641
Q8LHF3_ORYSJ
Os01g0681600 protein.
    
  0.558
P0610D01.10
Elongation factor 1-gamma 3; Probably plays a role in anchoring the complex to other cellular components.
    
  0.511
B1131G07.11
Elongation factor 1-gamma 2; Probably plays a role in anchoring the complex to other cellular components.
    
  0.511
B1131G07.12
Elongation factor 1-gamma 1; Probably plays a role in anchoring the complex to other cellular components.
    
  0.511
A0A0P0WV17
Os06g0237502 protein.
    
 0.440
A0A0P0WLY1
Os05g0392000 protein.
    
  0.430
A0A0P0WM13
Os05g0392050 protein.
    
  0.430
Q53NW5_ORYSJ
Skp1 family, tetramerisation domain containing protein, expressed; Belongs to the SKP1 family.
    
  0.426
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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