Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0N7KSU0 | A0A0P0WFP5 | A0A0N7KSU0 | A0A0P0WFP5 | Os11g0379251 protein. | Os04g0647300 protein. | 0.623 |
A0A0N7KSU0 | GCN5 | A0A0N7KSU0 | Q338B9 | Os11g0379251 protein. | Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). | 0.521 |
A0A0N7KSU0 | KIN14I | A0A0N7KSU0 | Q7XPJ0 | Os11g0379251 protein. | Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division. | 0.592 |
A0A0N7KSU0 | Q0JGJ6_ORYSJ | A0A0N7KSU0 | Q0JGJ6 | Os11g0379251 protein. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.697 |
A0A0N7KSU0 | Q0JHK4_ORYSJ | A0A0N7KSU0 | Q0JHK4 | Os11g0379251 protein. | Os01g0858500 protein. | 0.520 |
A0A0N7KSU0 | Q5NAK8_ORYSJ | A0A0N7KSU0 | Q5NAK8 | Os11g0379251 protein. | cDNA clone:J033050N08, full insert sequence. | 0.780 |
A0A0N7KSU0 | Q69MK0_ORYSJ | A0A0N7KSU0 | Q69MK0 | Os11g0379251 protein. | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | 0.612 |
A0A0N7KSU0 | Q6ZFX8_ORYSJ | A0A0N7KSU0 | Q6ZFX8 | Os11g0379251 protein. | Os02g0710900 protein. | 0.804 |
A0A0N7KSU0 | Q84SZ4_ORYSJ | A0A0N7KSU0 | Q84SZ4 | Os11g0379251 protein. | cDNA clone:J013132N21, full insert sequence. | 0.521 |
A0A0N7KSU0 | Q8LRG9_ORYSJ | A0A0N7KSU0 | Q8LRG9 | Os11g0379251 protein. | cDNA clone:J023036C23, full insert sequence. | 0.586 |
A0A0P0WFP5 | A0A0N7KSU0 | A0A0P0WFP5 | A0A0N7KSU0 | Os04g0647300 protein. | Os11g0379251 protein. | 0.623 |
A0A0P0WFP5 | GCN5 | A0A0P0WFP5 | Q338B9 | Os04g0647300 protein. | Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). | 0.984 |
A0A0P0WFP5 | KIN14I | A0A0P0WFP5 | Q7XPJ0 | Os04g0647300 protein. | Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division. | 0.483 |
A0A0P0WFP5 | Q0JGJ6_ORYSJ | A0A0P0WFP5 | Q0JGJ6 | Os04g0647300 protein. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.991 |
A0A0P0WFP5 | Q0JHK4_ORYSJ | A0A0P0WFP5 | Q0JHK4 | Os04g0647300 protein. | Os01g0858500 protein. | 0.977 |
A0A0P0WFP5 | Q69MK0_ORYSJ | A0A0P0WFP5 | Q69MK0 | Os04g0647300 protein. | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | 0.993 |
A0A0P0WFP5 | Q84SZ4_ORYSJ | A0A0P0WFP5 | Q84SZ4 | Os04g0647300 protein. | cDNA clone:J013132N21, full insert sequence. | 0.984 |
A0A0P0WFP5 | Q8LRG9_ORYSJ | A0A0P0WFP5 | Q8LRG9 | Os04g0647300 protein. | cDNA clone:J023036C23, full insert sequence. | 0.986 |
GCN5 | A0A0N7KSU0 | Q338B9 | A0A0N7KSU0 | Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). | Os11g0379251 protein. | 0.521 |
GCN5 | A0A0P0WFP5 | Q338B9 | A0A0P0WFP5 | Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity). | Os04g0647300 protein. | 0.984 |
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