Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0UXW7Os01g0144000 protein. (337 aa)    
Predicted Functional Partners:
Q6Z692_ORYSJ
Methyltransferase.
   
  
 0.635
Q6K719_ORYSJ
cDNA clone:J013105L14, full insert sequence.
      
 0.622
Q7XRW8_ORYSJ
Methyltransferase.
   
  
 0.614
Q5JMM6_ORYSJ
Os01g0753100 protein.
      
 0.604
OsJ_36091
DEAD-box ATP-dependent RNA helicase 28; Belongs to the DEAD box helicase family. DDX27/DRS1 subfamily.
      
 0.601
Q5QNI3_ORYSJ
cDNA clone:J033040B09, full insert sequence.
      
 0.539
Q2QLQ4_ORYSJ
cDNA clone:001-105-B02, full insert sequence.
   
  
 0.534
B7F9C5_ORYSJ
cDNA, clone: J075169H23, full insert sequence.
      
 0.505
A0A0P0XV93
Os10g0471350 protein.
      
 0.480
Q2R6C2_ORYSJ
Helicase associated domain family protein, expressed.
      
 0.479
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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