Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0UYN6Os01g0153200 protein. (114 aa)    
Predicted Functional Partners:
A0A0P0XU17
Os10g0411700 protein.
   
 0.998
RPS19A
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.998
RPS16A
40S ribosomal protein S16.
  
 0.998
Q7XZX4_ORYSJ
40S ribosomal protein S29, putative, expressed.
  
 0.998
Q6K853_ORYSJ
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.997
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.996
RPS21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.996
Q6YTY2_ORYSJ
cDNA clone:J013092O21, full insert sequence; Belongs to the universal ribosomal protein uS3 family.
  
 0.996
Q75G91_ORYSJ
40S ribosomal protein S3, putative, expressed; Belongs to the universal ribosomal protein uS3 family.
  
 0.996
Q7Y199_ORYSJ
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 0.996
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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