STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0UYP2Os01g0172900 protein; Belongs to the glycosyl hydrolase 28 family. (295 aa)    
Predicted Functional Partners:
A0A0P0XVJ6
Pectate lyase.
     
 0.926
A0A0P0XED9
Pectate lyase.
     
 0.921
A0A0P0VA72
Pectate lyase.
     
 0.901
Q8RYR4_ORYSJ
Pectate lyase.
     
 0.901
A0A0P0W6X3
Os04g0137100 protein.
     
 0.899
A0A0P0W752
Os04g0137001 protein.
     
 0.899
Q0JL04_ORYSJ
Pectinesterase.
     
 0.882
Q10MP6_ORYSJ
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
     
 0.882
Q2QNI9_ORYSJ
Pectinesterase.
     
 0.882
Q69J29_ORYSJ
Pectinesterase.
     
 0.882
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.