Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V031Os01g0212700 protein. (261 aa)    
Predicted Functional Partners:
Q0INR8_ORYSJ
Os12g0405700 protein.
      
 0.624
A0A0P0V079
Os01g0234850 protein.
    
 0.444
Q5Z885_ORYSJ
cDNA clone:J013002D10, full insert sequence; Belongs to the PI3/PI4-kinase family.
    
 0.444
PI4KG4
Phosphatidylinositol 4-kinase gamma 4; The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5- bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3) (By similarity). Involved in the control of flowering under long day conditions by promoting degradation of FTIP1. Recruits FTIP1 for degradation by the 26S proteasome in leaves, which affects RFT1 transport to the shoot apical meristem (SAM) ; Belongs to the PI3/PI4-kinase family. Type II PI4K subfamily.
    
 0.444
Q69M03_ORYSJ
cDNA clone:002-113-C04, full insert sequence.
  
     0.443
A0A0P0VVP8
Os03g0259500 protein.
    
  0.419
A0A0P0X666
Os07g0493033 protein.
    
  0.419
A0A0P0X6U8
Os07g0489500 protein.
    
  0.419
Ub-CEP52-1
Ubiquitin-60S ribosomal protein L40-1; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is inv [...]
    
  0.419
Ub-CEP52-2
Ubiquitin-60S ribosomal protein L40-2; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is inv [...]
    
  0.419
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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