Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V079Os01g0234850 protein. (455 aa)    
Predicted Functional Partners:
Q6ZH84_ORYSJ
cDNA clone:J013072E12, full insert sequence.
   
 0.981
Q7XK43_ORYSJ
Os04g0476800 protein.
   
 0.981
A0A0P0XQE9
Os09g0512450 protein.
   
 0.904
Q6K9N9_ORYSJ
cDNA clone:J023012G01, full insert sequence.
   
 0.904
A0A0P0WHC1
Os05g0122400 protein.
   
 0.902
Q0DHI3_ORYSJ
Os05g0463900 protein.
   
 0.902
Q0E4T3_ORYSJ
Os02g0101700 protein.
   
 0.902
A0A0P0XU17
Os10g0411700 protein.
   
 0.898
Q2QNF3_ORYSJ
60S ribosomal protein L2, putative, expressed.
   
 0.896
Q9FP55_ORYSJ
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
  0.889
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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