Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V197Os01g0260700 protein. (308 aa)    
Predicted Functional Partners:
RFC4
Replication factor C subunit 4; May be involved in DNA replication and thus regulate cell proliferation.
    
   0.664
A0A0P0XY99
Os11g0125601 protein.
      
 0.642
STR1
Os09g0401100 protein.
    
 
 0.641
XBOS33
Probable E3 ubiquitin-protein ligase XBOS33.
    
 
 0.640
A0A0P0VYK0
Os03g0402400 protein; Belongs to the universal ribosomal protein uS2 family.
    
   0.632
Q10QU9_ORYSJ
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
   0.632
Q8H3I3_ORYSJ
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
   0.632
POLD1
DNA polymerase delta catalytic subunit; This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction.
    
 
 0.631
UXS-3
RmlD substrate binding domain containing protein, expressed.
      
 0.628
LOC_Os07g05800
Glutathione transferase; Belongs to the GST superfamily.
      
 0.622
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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