Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V2G2Os01g0337100 protein; Belongs to the terpene synthase family. (390 aa)    
Predicted Functional Partners:
Q65XM9_ORYSJ
cDNA clone:J023072A14, full insert sequence; Belongs to the FPP/GGPP synthase family.
     
 0.745
Q6ET88_ORYSJ
cDNA clone:001-204-C07, full insert sequence; Belongs to the FPP/GGPP synthase family.
     
 0.721
Q94DE7_ORYSJ
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.719
O22105_ORYSJ
cDNA, clone: J090011P14, full insert sequence.
     
 0.716
Q6Z368_ORYSJ
cDNA clone:001-114-B01, full insert sequence.
     
 0.716
A0A0N7KEV5
Os02g0197700 protein.
     
  0.713
Q0JJI1_ORYSJ
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
  0.713
Q69IM7_ORYSJ
cDNA clone:001-035-C02, full insert sequence.
     
  0.713
FPPS1
cDNA clone:001-036-D06, full insert sequence; Belongs to the FPP/GGPP synthase family.
     
 0.665
A0A0P0V0B7
Os01g0248701 protein; Belongs to the FPP/GGPP synthase family.
     
  0.637
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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