Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V345Os01g0497400 protein. (223 aa)    
Predicted Functional Partners:
Q10MF3_ORYSJ
cDNA clone:001-018-G06, full insert sequence.
    
 0.773
Q6K3E6_ORYSJ
3-ketoacyl-CoA synthase.
     
 0.711
CML18
Probable calcium-binding protein CML18; Potential calcium sensor.
    
 0.683
CML16
Probable calcium-binding protein CML16; Potential calcium sensor.
    
 0.683
Q10P61_ORYSJ
3-ketoacyl-CoA synthase.
     
 0.677
A0A0P0W6H3
Os03g0852800 protein.
   
 
 0.672
A0A0P0Y3X8
Os11g0593000 protein.
   
 
 0.672
Q7XV86_ORYSJ
cDNA clone:J023008D14, full insert sequence.
    
 
 0.665
Q655M2_ORYSJ
Os01g0102000 protein.
   
 
 0.664
Q8RYK2_ORYSJ
cDNA clone:J033033G16, full insert sequence.
   
 
 0.664
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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