STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V3S3Os01g0547200 protein. (889 aa)    
Predicted Functional Partners:
A0A0P0XQL1
Os09g0568200 protein.
    
 
 0.871
A0A0N7KGE9
Os03g0101700 protein.
    
 0.859
A0A0P0W2Z7
Os03g0722400 protein.
    
 0.859
OsDDM1a
Chromatin remodeling factor DDM1a.
    
 0.859
Q0JIP0_ORYSJ
Os01g0786800 protein.
    
 0.859
Q53K25_ORYSJ
cDNA clone:006-202-F11, full insert sequence.
    
 0.859
Q5WN07_ORYSJ
Os05g0150300 protein.
    
 0.859
Q5ZAL4_ORYSJ
Os01g0786700 protein.
    
 0.859
Q6ZA07_ORYSJ
Os08g0387200 protein.
    
 0.859
Q75GI8_ORYSJ
cDNA clone:J023028O14, full insert sequence.
    
 0.859
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.