Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V481Os01g0568100 protein. (263 aa)    
Predicted Functional Partners:
Q5JNB3_ORYSJ
Os01g0977600 protein.
    
 
 0.726
A0A0P0XM61
Os09g0413100 protein.
    
 0.719
Q10Q92_ORYSJ
cDNA clone:J023025N13, full insert sequence.
    
 0.718
A0A0P0VUU2
Os03g0218100 protein.
    
 0.681
MER3
ATP-dependent DNA helicase MER3 homolog; DNA helicase required for crossover formation, complete synapsis of homologous chromosomes and bivalent formation during meiosis. Is specific to recombination events resulting in interference- sensitive crossovers (class I meiotic crossover). Works cooperatively with ZIP4 to promote crossovers ; Belongs to the helicase family. SKI2 subfamily.
    
 0.681
Q0DU12_ORYSJ
Os03g0213400 protein.
    
 0.681
Q10PX4_ORYSJ
cDNA clone:002-184-F06, full insert sequence.
    
 0.681
NCBP
Eukaryotic translation initiation factor NCBP; Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.674
RPS20
40S ribosomal protein S20; Belongs to the universal ribosomal protein uS10 family.
    
 
 0.662
Q10P27_ORYSJ
40S ribosomal protein S20, putative, expressed.
    
 
 0.662
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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