STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YUCCA1Indole-3-pyruvate monooxygenase YUCCA1; Involved in auxin biosynthesis. Converts the indole-3-pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA) (Probable). Functions downstream of TAR2 in auxin biosynthesis. Functions upstream of WOX11, a transcription factor that promotes the development of crown roots ; Belongs to the FMO family. (406 aa)    
Predicted Functional Partners:
TAR2
Tryptophan aminotransferase-related protein 2; Probable tryptophan aminotransferase involved in auxin (IAA) biosynthesis. Required for auxin production to initiate multiple change in growth in response to environmental and developmental cues. Functions upstream of YUCCA1 in auxin biosynthesis. Required for polar auxin transport.
     
 0.968
TAR1
Tryptophan aminotransferase-related protein 1; Probable tryptophan aminotransferase that may be involved in the regulation of auxin production in developing rice grains. Belongs to the alliinase family.
     
 0.965
Q94EG1_ORYSJ
Os01g0178000 protein.
     
 0.954
OsJ_30665
Probable aldehyde oxidase 1.
  
 
 0.927
AMI1
Amidase 1; Amidase involved in auxin biosynthesis (Probable). Converts indole-3-acetamide (IAM) to indole-3-acetate, and phenyl-2-acetamide (PAM) to phenyl-2-acetate. Substrate preference is PAM > IAM.
    
 0.908
ALDO2_ORYSJ
Probable aldehyde oxidase 2.
  
 
 0.897
ALDO3_ORYSJ
Probable aldehyde oxidase 3.
  
 
 0.897
A3AQC6_ORYSJ
cDNA, clone: J100072C12, full insert sequence.
    
 0.896
A0A0P0Y7M6
Os12g0177900 protein.
  
 
 0.884
Q69P84_ORYSJ
cDNA clone:001-032-H04, full insert sequence; Belongs to the aldehyde dehydrogenase family.
  
 
 0.880
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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