Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A0P0Y7M6 | A3AQC6_ORYSJ | A0A0P0Y7M6 | A3AQC6 | Os12g0177900 protein. | cDNA, clone: J100072C12, full insert sequence. | 0.857 |
A0A0P0Y7M6 | ALDO2_ORYSJ | A0A0P0Y7M6 | Q852M1 | Os12g0177900 protein. | Probable aldehyde oxidase 2. | 0.498 |
A0A0P0Y7M6 | ALDO3_ORYSJ | A0A0P0Y7M6 | Q852M2 | Os12g0177900 protein. | Probable aldehyde oxidase 3. | 0.498 |
A0A0P0Y7M6 | AMI1 | A0A0P0Y7M6 | Q7XTK3 | Os12g0177900 protein. | Amidase 1; Amidase involved in auxin biosynthesis (Probable). Converts indole-3-acetamide (IAM) to indole-3-acetate, and phenyl-2-acetamide (PAM) to phenyl-2-acetate. Substrate preference is PAM > IAM. | 0.857 |
A0A0P0Y7M6 | OsJ_30665 | A0A0P0Y7M6 | Q7XH05 | Os12g0177900 protein. | Probable aldehyde oxidase 1. | 0.498 |
A0A0P0Y7M6 | Q69P84_ORYSJ | A0A0P0Y7M6 | Q69P84 | Os12g0177900 protein. | cDNA clone:001-032-H04, full insert sequence; Belongs to the aldehyde dehydrogenase family. | 0.881 |
A0A0P0Y7M6 | Q94EG1_ORYSJ | A0A0P0Y7M6 | Q94EG1 | Os12g0177900 protein. | Os01g0178000 protein. | 0.408 |
A0A0P0Y7M6 | YUCCA1 | A0A0P0Y7M6 | A0A0P0V5U9 | Os12g0177900 protein. | Indole-3-pyruvate monooxygenase YUCCA1; Involved in auxin biosynthesis. Converts the indole-3-pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA) (Probable). Functions downstream of TAR2 in auxin biosynthesis. Functions upstream of WOX11, a transcription factor that promotes the development of crown roots ; Belongs to the FMO family. | 0.884 |
A3AQC6_ORYSJ | A0A0P0Y7M6 | A3AQC6 | A0A0P0Y7M6 | cDNA, clone: J100072C12, full insert sequence. | Os12g0177900 protein. | 0.857 |
A3AQC6_ORYSJ | ALDO2_ORYSJ | A3AQC6 | Q852M1 | cDNA, clone: J100072C12, full insert sequence. | Probable aldehyde oxidase 2. | 0.663 |
A3AQC6_ORYSJ | ALDO3_ORYSJ | A3AQC6 | Q852M2 | cDNA, clone: J100072C12, full insert sequence. | Probable aldehyde oxidase 3. | 0.663 |
A3AQC6_ORYSJ | OsJ_30665 | A3AQC6 | Q7XH05 | cDNA, clone: J100072C12, full insert sequence. | Probable aldehyde oxidase 1. | 0.663 |
A3AQC6_ORYSJ | Q69P84_ORYSJ | A3AQC6 | Q69P84 | cDNA, clone: J100072C12, full insert sequence. | cDNA clone:001-032-H04, full insert sequence; Belongs to the aldehyde dehydrogenase family. | 0.857 |
A3AQC6_ORYSJ | YUCCA1 | A3AQC6 | A0A0P0V5U9 | cDNA, clone: J100072C12, full insert sequence. | Indole-3-pyruvate monooxygenase YUCCA1; Involved in auxin biosynthesis. Converts the indole-3-pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA) (Probable). Functions downstream of TAR2 in auxin biosynthesis. Functions upstream of WOX11, a transcription factor that promotes the development of crown roots ; Belongs to the FMO family. | 0.896 |
ALDO2_ORYSJ | A0A0P0Y7M6 | Q852M1 | A0A0P0Y7M6 | Probable aldehyde oxidase 2. | Os12g0177900 protein. | 0.498 |
ALDO2_ORYSJ | A3AQC6_ORYSJ | Q852M1 | A3AQC6 | Probable aldehyde oxidase 2. | cDNA, clone: J100072C12, full insert sequence. | 0.663 |
ALDO2_ORYSJ | AMI1 | Q852M1 | Q7XTK3 | Probable aldehyde oxidase 2. | Amidase 1; Amidase involved in auxin biosynthesis (Probable). Converts indole-3-acetamide (IAM) to indole-3-acetate, and phenyl-2-acetamide (PAM) to phenyl-2-acetate. Substrate preference is PAM > IAM. | 0.868 |
ALDO2_ORYSJ | Q69P84_ORYSJ | Q852M1 | Q69P84 | Probable aldehyde oxidase 2. | cDNA clone:001-032-H04, full insert sequence; Belongs to the aldehyde dehydrogenase family. | 0.665 |
ALDO2_ORYSJ | YUCCA1 | Q852M1 | A0A0P0V5U9 | Probable aldehyde oxidase 2. | Indole-3-pyruvate monooxygenase YUCCA1; Involved in auxin biosynthesis. Converts the indole-3-pyruvic acid (IPA) produced by the TAA family to indole-3-acetic acid (IAA) (Probable). Functions downstream of TAR2 in auxin biosynthesis. Functions upstream of WOX11, a transcription factor that promotes the development of crown roots ; Belongs to the FMO family. | 0.897 |
ALDO3_ORYSJ | A0A0P0Y7M6 | Q852M2 | A0A0P0Y7M6 | Probable aldehyde oxidase 3. | Os12g0177900 protein. | 0.498 |
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