STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V6P5Os01g0684800 protein. (295 aa)    
Predicted Functional Partners:
Q0JNR7_ORYSJ
Os01g0269100 protein.
   
 0.969
A0A0N7KSZ9
Os11g0523400 protein.
    
 0.938
A0A0P0VU37
Os03g0193700 protein.
    
 0.938
A0A0P0VU57
Os03g0193901 protein.
    
 0.938
A0A0P0Y3K4
Os11g0523500 protein.
    
 0.938
Q6Z8L7_ORYSJ
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.938
Q5JMS3_ORYSJ
cDNA clone:001-007-D09, full insert sequence; Belongs to the synaptobrevin family.
    
 
 0.776
Q5N9F2_ORYSJ
cDNA clone:006-207-F07, full insert sequence; Belongs to the synaptobrevin family.
    
 
 0.776
Q0DGE4_ORYSJ
cDNA clone:001-102-H02, full insert sequence.
    
 0.770
Q5JLU1_ORYSJ
cDNA clone:J013000E15, full insert sequence.
    
 0.770
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.