Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V765Os01g0706200 protein; Belongs to the cullin family. (160 aa)    
Predicted Functional Partners:
A0A0P0UYZ4
Os01g0185400 protein.
    
 0.914
Q0DY92_ORYSJ
Os02g0708300 protein.
    
 0.910
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
    
 0.910
Q53NW5_ORYSJ
Skp1 family, tetramerisation domain containing protein, expressed; Belongs to the SKP1 family.
   
 0.908
A0A0P0XQE9
Os09g0512450 protein.
    
 0.903
Q6K9N9_ORYSJ
cDNA clone:J023012G01, full insert sequence.
    
 0.903
CSN5
COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (By similarity). Involved in early response to iron deficiency (Probable).
   
 0.899
Q10QG2_ORYSJ
COP9 signalosome complex subunit 4, putative, expressed.
    
 0.889
C7IY94_ORYSJ
Os02g0169800 protein.
   
 0.885
Q6H4V4_ORYSJ
cDNA clone:J023003N20, full insert sequence.
   
 0.885
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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