STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0V8Q5Os01g0772700 protein. (1200 aa)    
Predicted Functional Partners:
B9F3M7_ORYSJ
Os02g0786000 protein.
  
 
 0.780
Q75KN8_ORYSJ
Small GTP-binding protein domain containing protein, expressed; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.575
Q7XI38_ORYSJ
cDNA clone:J013030K11, full insert sequence; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.575
Q7XM27_ORYSJ
Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.
    
 
 0.542
A0A0P0V375
Os01g0512200 protein.
    
 
 0.539
A0A0N7KI63
Os03g0786900 protein.
   
 
 0.530
ALN
Probable allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoate by hydrolytic cleavage of the five-member hydantoin ring. Catalyzes the first step of the ureide allantoin degradation followed by the sequential activity of AAH, UGLYAH and UAH which allows a complete purine breakdown without the intermediate generation of urea (By similarity); Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
   
    0.525
Q94J90_ORYSJ
cDNA clone:J023114O11, full insert sequence.
   
    0.525
Q7XSA0_ORYSJ
Os04g0567200 protein.
  
    0.520
Q9LDE9_ORYSJ
Os01g0221600 protein.
  
    0.510
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.