Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VAD9Os01g0852650 protein. (467 aa)    
Predicted Functional Partners:
Q10BC8_ORYSJ
HAT family dimerisation domain containing protein, expressed.
  
 
   0.497
A0A0P0WNF9
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.490
Q7XUC9_ORYSJ
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.490
Q0J0T2_ORYSJ
Os09g0499600 protein.
  
 
   0.467
OJ1122_B08
Zinc finger BED domain-containing protein RICESLEEPER 1; Transposase-like protein that is essential for plant growth and development. May regulate global gene expression by recruiting other cellular factors.
  
 
   0.459
OsJ_12466
Zinc finger BED domain-containing protein RICESLEEPER 2; Transposase-like protein that is essential for plant growth and development. May regulate global gene expression by recruiting other cellular factors.
  
 
   0.459
GCN5
Histone acetyltransferase GCN5; Acetylates histone H3. Acetylation of histones gives a specific tag for epigenetic transcription activation. Operates in concert with certain DNA-binding transcriptional activators. Acts via the formation of large multiprotein complexes that modify the chromatin (By similarity).
    
  0.453
Q84SZ4_ORYSJ
cDNA clone:J013132N21, full insert sequence.
    
  0.453
Q0E362_ORYSJ
cDNA clone:J033000H11, full insert sequence.
  
     0.443
RSLE3_ORYSJ
Zinc finger BED domain-containing protein RICESLEEPER 3; Transposase-like protein that is essential for plant growth and development. May regulate global gene expression by recruiting other cellular factors.
  
 
   0.433
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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