Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VB25Os01g0873300 protein. (79 aa)    
Predicted Functional Partners:
OsJ_27425
GDT1-like protein 5; Belongs to the GDT1 family.
      
 0.623
Q5W6S2_ORYSJ
Os05g0345500 protein.
    
 0.594
Q6YZD2_ORYSJ
cDNA clone:001-121-C01, full insert sequence.
      
 0.538
Q0DY92_ORYSJ
Os02g0708300 protein.
    
 0.537
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
    
 0.537
Q6ZJ47_ORYSJ
cDNA clone:001-017-E02, full insert sequence.
    
  0.529
A0A0P0V765
Os01g0706200 protein; Belongs to the cullin family.
    
 0.500
A0A0P0WHY1
Os05g0149600 protein.
    
 0.500
A0A0P0WIW4
Os05g0193900 protein; Belongs to the cullin family.
    
 0.500
A0A0P0Y8F5
Os12g0236250 protein; Belongs to the cullin family.
    
 0.500
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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