Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VBV2Os01g0899100 protein. (117 aa)    
Predicted Functional Partners:
A0A0P0WV17
Os06g0237502 protein.
     
  0.495
Q0JE83_ORYSJ
Os04g0311400 protein; Belongs to the peptidase C1 family.
   
 0.443
Q6K7A3_ORYSJ
cDNA clone:J013002F17, full insert sequence; Belongs to the peptidase C1 family.
   
 0.443
A0A0P0V277
Os01g0347500 protein.
   
 0.442
Q8GVR2_ORYSJ
cDNA clone:001-115-C06, full insert sequence; Belongs to the peptidase C1 family.
   
 0.442
A0A0N7KCX2
Os01g0347600 protein; Belongs to the peptidase C1 family.
   
 0.439
H0212B02.7
Oryzain alpha chain; Belongs to the peptidase C1 family.
   
 0.439
H0818H01.14
Oryzain beta chain; Probable thiol protease.
   
 0.439
Q6L4X7_ORYSJ
Os05g0508300 protein; Belongs to the peptidase C1 family.
   
 0.439
APR1
Probable 5'-adenylylsulfate reductase 1, chloroplastic; Reduces sulfate for Cys biosynthesis.
    
 0.439
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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