STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VC63Os01g0920300 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (318 aa)    
Predicted Functional Partners:
B7EYF6_ORYSJ
cDNA clone:001-204-A11, full insert sequence.
   
 0.662
KIN14R
Kinesin-like protein KIN-14R; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIN-14 subfamily.
    
 
 0.653
A0A0P0XE68
Os08g0295100 protein.
    
 0.650
Q2QX46_ORYSJ
cDNA clone:J033150M03, full insert sequence.
     
 0.648
Q5N7E8_ORYSJ
cDNA clone:001-035-F08, full insert sequence.
     
 0.648
Q8GRK1_ORYSJ
cDNA clone:006-310-G03, full insert sequence.
     
 0.648
A0A0P0X6D6
Os07g0498800 protein.
    
 0.642
A0A0P0V1T6
Os01g0314700 protein.
    
 0.625
Q5Z851_ORYSJ
cDNA clone:001-133-C07, full insert sequence.
    
 
 0.622
Q5Z852_ORYSJ
Os06g0700000 protein; Belongs to the peptidase S8 family.
    
 
 0.622
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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