Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VDD4Os01g0973200 protein. (345 aa)    
Predicted Functional Partners:
Q10HT0_ORYSJ
Nuf2 family protein, expressed.
   
 0.998
Q7EY09_ORYSJ
Os08g0163100 protein.
   
 0.998
Q6ZC35_ORYSJ
Os08g0468400 protein.
   
 0.996
A0A0P0XKE9
Os09g0277600 protein.
   
 0.987
Q75IA9_ORYSJ
Protein kinase family protein, putative, expressed.
   
 
 0.949
Q0JC85_ORYSJ
cDNA clone:001-007-B02, full insert sequence.
   
 
 0.946
A0A0P0WH03
Os05g0110700 protein.
  
  
 
0.903
A0A0N7KSD3
Os11g0128700 protein.
   
 0.890
A0A0P0WW29
Os06g0298000 protein.
   
 0.890
B9FXF7_ORYSJ
Os07g0508500 protein.
   
 0.890
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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