Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VES3Os02g0142950 protein. (136 aa)    
Predicted Functional Partners:
A0A0P0VG25
Os02g0202250 protein.
   
 0.988
Q0E2Z5_ORYSJ
Os02g0202300 protein.
   
 0.988
A0A0P0Y588
Os11g0643700 protein.
   
 0.986
Q5ZBF5_ORYSJ
cDNA clone:J023044A10, full insert sequence; Belongs to the WD repeat SEC13 family.
   
 0.981
Q10LH9_ORYSJ
Nuclear pore protein.
   
 0.979
A0A0P0WEN1
Os04g0608400 protein.
   
 0.977
Q8LIZ0_ORYSJ
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.977
Q6YVE2_ORYSJ
cDNA clone:001-023-C01, full insert sequence.
   
 0.975
A0A0P0VUU9
Os03g0223800 protein.
   
 0.973
Q5Z4E0_ORYSJ
Os06g0305200 protein.
   
 0.973
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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