Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VG12Os02g0194600 protein. (657 aa)    
Predicted Functional Partners:
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
  0.599
A0A0P0V1T6
Os01g0314700 protein.
    
  0.433
C7J1U6_ORYSJ
Os04g0589400 protein.
   
  0.430
RGB1
Guanine nucleotide-binding protein subunit beta; Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  0.429
A0A0P0WLY1
Os05g0392000 protein.
    
  0.428
A0A0P0WM13
Os05g0392050 protein.
    
  0.428
Q6ZH84_ORYSJ
cDNA clone:J013072E12, full insert sequence.
    
  0.426
Q7XK43_ORYSJ
Os04g0476800 protein.
    
  0.426
A0A0P0XU08
Os10g0372500 protein.
   
  0.425
Q7XDE1_ORYSJ
cDNA clone:002-174-D09, full insert sequence.
   
  0.425
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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