Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VG62Os02g0203000 protein. (199 aa)    
Predicted Functional Partners:
PPS
cDNA clone:J013104O14, full insert sequence.
    
 0.990
Q65XL7_ORYSJ
Os05g0571000 protein.
    
 0.923
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
 0.916
Q6ZC35_ORYSJ
Os08g0468400 protein.
    
 0.890
A0A0N7KU73
Os12g0558133 protein.
    
 0.886
Q5JM56_ORYSJ
cDNA clone:J033076N16, full insert sequence.
    
 0.886
A0A0P0UYZ1
Os01g0174000 protein.
     
  0.858
O82114_ORYSJ
cDNA clone:001-205-D08, full insert sequence.
    
 
 0.853
Q6H630_ORYSJ
cDNA clone:J023090D24, full insert sequence.
    
 
 0.853
A0A0N7KUB6
Os12g0601800 protein.
   
 0.843
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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