STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VGE7Os02g0216100 protein. (207 aa)    
Predicted Functional Partners:
B1153E06.24
Zinc finger CCCH domain-containing protein 45.
   
 0.993
OJ1003_C09.22
Cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition.
   
 0.936
A0A0N7KEF1
Os01g0951000 protein.
    
 0.932
Q2QNB5_ORYSJ
Suppressor of forked protein containing protein, expressed.
    
 0.929
B1129G05.17
Zinc finger CCCH domain-containing protein 7.
    
 0.902
A0A0P0VK19
Os02g0539600 protein.
   
 0.886
A0A0P0X3R7
Os07g0221100 protein.
   
 0.876
Q84JJ2_ORYSJ
Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed.
   
 0.876
CPSF1_ORYSJ
Probable cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity).
   
 0.875
C7IXA8_ORYSJ
Os01g0694400 protein.
    
 0.873
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.