Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VM60Os02g0632900 protein. (363 aa)    
Predicted Functional Partners:
C7J1U6_ORYSJ
Os04g0589400 protein.
    
 0.723
Q6ZH84_ORYSJ
cDNA clone:J013072E12, full insert sequence.
   
  0.683
Q7XK43_ORYSJ
Os04g0476800 protein.
   
  0.683
A0A0P0WLY1
Os05g0392000 protein.
    
  0.598
A0A0P0WM13
Os05g0392050 protein.
    
  0.598
A0A0P0WV17
Os06g0237502 protein.
    
 0.566
WEE1
Wee1-like protein kinase.
    
 0.544
Q6Z7I5_ORYSJ
Os02g0329300 protein.
    
 0.542
A0A0N7KR07
Os09g0484300 protein.
    
  0.535
Q5NAK8_ORYSJ
cDNA clone:J033050N08, full insert sequence.
    
 0.531
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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