Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
A0A0P0VM80Phenylalanine ammonia-lyase. (715 aa)    
Predicted Functional Partners:
4CL3
Probable 4-coumarate--CoA ligase 3.
  
 
 0.960
4CL2
Probable 4-coumarate--CoA ligase 2.
  
 
 0.959
4CL5
Probable 4-coumarate--CoA ligase 5.
  
 
 0.958
OsC4HL
cDNA clone:001-002-H11, full insert sequence; Belongs to the cytochrome P450 family.
   
 
 0.953
4CL1
Probable 4-coumarate--CoA ligase 1; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.950
4CL4
Probable 4-coumarate--CoA ligase 4; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.931
4CLL9
4-coumarate--CoA ligase-like 9.
  
 
 0.926
Q0JDF7_ORYSJ
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
     
 0.923
A0A0P0Y4R5
Os11g0644800 protein.
   
 
 0.917
Q10N17_ORYSJ
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
     
 0.916
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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