Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VP92Os02g0739900 protein. (612 aa)    
Predicted Functional Partners:
A0A0P0W9S9
Os04g0374200 protein.
  
 0.724
Q5VPH2_ORYSJ
cDNA clone:006-207-A06, full insert sequence.
  
 0.724
A0A0P0XU17
Os10g0411700 protein.
   
  0.678
Q2QX64_ORYSJ
cDNA clone:J023025N02, full insert sequence.
    
   0.674
A0A0P0Y646
Os12g0109000 protein.
  
 
 0.663
Q10Q61_ORYSJ
ADP-glucose pyrophosphorylase family protein, putative, expressed.
  
 
 0.663
RPS19A
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
  0.656
Q6L536_ORYSJ
cDNA clone:J023064E24, full insert sequence.
    
   0.653
CSN5
COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (By similarity). Involved in early response to iron deficiency (Probable).
    
 0.638
Q5ZBF5_ORYSJ
cDNA clone:J023044A10, full insert sequence; Belongs to the WD repeat SEC13 family.
    
   0.632
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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