Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VRX0Os03g0103300 protein. (74 aa)    
Predicted Functional Partners:
Q69NE0_ORYSJ
Os09g0410300 protein.
      
 0.458
Q67J23_ORYSJ
cDNA clone:002-170-E12, full insert sequence.
      
 0.443
Q0JAS6_ORYSJ
Os04g0580400 protein.
    
  0.430
Q8H8G9_ORYSJ
Ubiquitin-conjugating enzyme E2 I, putative, expressed; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.430
Q8W2X7_ORYSJ
Ubiquitin-conjugating enzyme E2 I, putative, expressed; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.430
A0A0P0V7U2
Os01g0733801 protein.
      
 0.425
SCAMP6
Secretory carrier-associated membrane protein 6; Probably involved in membrane trafficking; Belongs to the SCAMP family.
      
 0.425
Q5JKQ4_ORYSJ
cDNA clone:006-307-H03, full insert sequence.
      
 0.425
Q6Z9Z3_ORYSJ
cDNA clone:001-124-H06, full insert sequence.
      
 0.425
Q9AUZ3_ORYSJ
Adaptin ear-binding coat-associated protein 2, putative, expressed.
      
 0.425
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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