Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VSN7Os03g0133300 protein. (349 aa)    
Predicted Functional Partners:
Q0JDH5_ORYSJ
Os04g0403400 protein.
      
 0.626
ISA1
Isoamylase 1, chloroplastic; Starch-debranching enzyme involved in amylopectin biosynthesis in endosperm. Functions by removing excess branches or improper branches that interfere with the formation of double helices of the cluster chains of amylopectin and crystallization of starch. Works as ISA1 homooligomer or together with ISA2 as heterooligomer. The heterooligomer ISA1 and ISA2 possesses higher affinity than the ISA1 homooligomer for various branched polyglucans in vitro, but no marked differences exist in chain preferences for debranching of amylopectin and phytoglycogen between [...]
      
 0.623
Q10CG2_ORYSJ
Amine oxidase, putative, expressed.
      
 0.622
A0A0N7KLN3
Os06g0184400 protein.
      
 0.541
A0A0P0WGA6
Os04g0675101 protein.
      
 0.541
A0A0P0WGK9
Os04g0675200 protein.
      
 0.541
Q0J927_ORYSJ
Os04g0675300 protein.
      
 0.541
Q53WM9_ORYSJ
Os05g0521500 protein.
      
 0.541
Q5JKW4_ORYSJ
cDNA clone:J033090F18, full insert sequence.
      
 0.541
Q65WU3_ORYSJ
Os05g0173800 protein.
      
 0.538
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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