Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
A0A0P0VST4Os03g0138100 protein. (643 aa)    
Predicted Functional Partners:
U2AF65B
Splicing factor U2af large subunit B; Necessary for the splicing of pre-mRNA.
     
 0.964
U2AF65A
Splicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA.
     
 0.964
Q0JKK3_ORYSJ
Os01g0667800 protein.
   
 0.945
U2AF35B
Splicing factor U2af small subunit B; Necessary for the splicing of pre-mRNA; Belongs to the splicing factor SR family.
   
 0.945
U2AF35A
Splicing factor U2af small subunit A; Necessary for the splicing of pre-mRNA.
   
 0.940
PRP19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.
   
 0.897
A0A0P0W9C3
Os04g0348300 protein.
   
 0.834
Q84MU4_ORYSJ
Pre-mRNA splicing factor PRP17, putative, expressed.
   
 0.823
A0A0P0W9E9
Os04g0385700 protein.
   
 
 0.820
Q6ZKE8_ORYSJ
Os08g0178300 protein.
    
 
 0.814
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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